GgaEX0013753 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18804316-18815223:-
Coord C1 exon
chr7:18815040-18815223
Coord A exon
chr7:18808739-18808823
Coord C2 exon
chr7:18804316-18804376
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTTTTATCTTCTGTCTATAGGCC
3' ss Score
10.95
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TGGACCAGGAACACCACTTTCAGGACAAATACTTATTTTATCGATTTTTGGATGATGAGCGTGAAGATGCCCCTTTGCCAACAGAGGAAGAGAAAAAGGAGTGTGATGAGGAGCTACAGGACACTATGCTGCTTCTGTCCCAGATTGGGCCAGATGCTCATATGAGGATGATTCTCAGAAAACC
Seq A exon
GCCTGGCCAGAGAAGTATAGATGATTTAGAAATTATATATGAAGAACTTCTTCACATTAAAGCCTTATCTCATCTTTCTACTACA
Seq C2 exon
GTAAAGAGAGAATTAGCAGGTGTCCTCATTTTTGAGTCGCATCCCAAAGCTGGAACAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=PD(21.1=24.2)
A:
NO
C2:
PF0002724=cNMP_binding=PU(10.3=42.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATGCCCCTTTGCCAACA
R:
ACTGTTCCAGCTTTGGGATGC
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]