DreEX6081738 @ danRer10
Exon Skipping
Gene
ENSDARG00000079291 | rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:ZFIN;Acc:ZDB-GENE-090312-38]
Coordinates
chr23:33488165-33490868:+
Coord C1 exon
chr23:33488165-33488286
Coord A exon
chr23:33488458-33488638
Coord C2 exon
chr23:33490784-33490868
Length
181 bp
Sequences
Splice sites
3' ss Seq
TGATCTGTCAAAATATGCAGTAA
3' ss Score
2.94
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ACAGTGCTGCAGCGGAAAGGAGCTTGTGGATTGGTTAATGAAACTCAATGATTGTTTCCAGTCCCGGAGTCAGGCAGTCGGAATGTGGCAGGTTTTGGTGGATGAGGGCATTTTGGGTCATG
Seq A exon
TAAAACAGGAGTTAAACTTCCATGACAAAGACACACAGTTTTACCGCTTTATGGAAGCAGAGTTTGACCTCAATCACACAACTAACGAAAAAGACTCCAAAGACGACGAACTACAAGAGAGTTTATCGCTACTAATCCAGATGGGCCCAGATGCTCTTTTGACGATGATACTGCGTAAATG
Seq C2 exon
CCCAAGCCAGAGAACCCCAGAAGATCTGGAAGTTATTTATGAAGAACTTCTGCACGTCAAAGCTGTGGCCCACTTGTCTACATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079291-'6-6,'6-5,7-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(58.6=100)
A:
PF0061016=DEP=PD(22.9=26.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGCTGCAGCGGAAAG
R:
TAGACAAGTGGGCCACAGCTT
Band lengths:
202-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]