MmuEX0038792 @ mm9
Exon Skipping
Gene
ENSMUSG00000022469 | Rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:MGI Symbol;Acc:MGI:2441741]
Coordinates
chr15:97580700-97591660:-
Coord C1 exon
chr15:97591539-97591660
Coord A exon
chr15:97591010-97591178
Coord C2 exon
chr15:97580700-97580825
Length
169 bp
Sequences
Splice sites
3' ss Seq
GCCATATCTTGGCTCCCCAGTAA
3' ss Score
5.26
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCATTGCTGCTCTGGCCGGGAGCTAGTGGATGGGATCTTGGCTCTGGGGCTTGGGGTCCACTCACGGAGCCAAGCCGTGGGCATCTGCCAAGTGTTGCTGGATGAGGGTGCCCTTTGTCATG
Seq A exon
TAAAACATGACTGGACCTTCCAGGACCGAGATGCCCAATTCTACAGGTTCCCTGGACCGGAGCCCGAGCCTACAGGAACTCAAGATGTGGAAGAGGAGCTTGTTGAGGCTATGGCCCTCCTGTCCCAGCGAGGGCCTGATGCCCTACTCACCGTGGCGCTCCGGAAGCC
Seq C2 exon
ACCCCACACCCTGAGCAGCTGGGCCCCACTCTGGGTTCTTCTGAGATGCTGGACCTAGTGAGCGCCAAGGACCTGGCAGGCCAGCTGACCGACCATGACTGGAACCTCTTCAACAGGATCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022469_MULTIEX1-5/18=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.329 C2=0.194
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100),PF069047=Extensin-like_C=PU(68.5=88.1)
A:
PF0061016=DEP=PD(22.5=28.1)
C2:
PF0061714=RasGEF=PU(12.9=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGCTGCTCTGGCCGG
R:
TGGTGGATCCTGTTGAAGAGGT
Band lengths:
246-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: