DreEX0007298 @ danRer10
Exon Skipping
Gene
ENSDARG00000075924 | RAPGEF4 (1 of 2)
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:HGNC Symbol;Acc:HGNC:16626]
Coordinates
chr6:6740725-6745347:+
Coord C1 exon
chr6:6740725-6740846
Coord A exon
chr6:6743453-6743636
Coord C2 exon
chr6:6745263-6745347
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCGTTATGTGGGCAGTCG
3' ss Score
5.41
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GCAGTGTTGTGTGGGCACTGAGCTGGTGGACTGGTTGCTTCAGCAGAGCTCATGTGTTCACAGTCGGGCTCATGCTGTGGGAATGTGGCAGGTGCTGCTGGAGGAAGGAGTTCTGAATCACG
Seq A exon
TCGACCATGAACTCAACTTTCAAGATAAGTACCTCTTTTACCGTTTCCTCGACGATGAGGAGGAGGATGCGGTGTTGCCTAGCGACGATGAGAAACGCGAAGCTGAGGAAGAGCTGCAGGAGACACTCCTCTTCCTCTCTCAGATTGGCCCTGACGCGCACATGCGCATGATCCTCAGGAAACC
Seq C2 exon
GCCTGGTCAAAGAACAGCTGAAGACCTGGAGATTATTTATGATGAGCTGCTGCATATCAAAGCTGTCTCTCACCTGTCCAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075924-'9-12,'9-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.145 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100)
A:
PF0061016=DEP=PD(21.1=24.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTTGTGTGGGCACTGAG
R:
GTTGGACAGGTGAGAGACAGC
Band lengths:
202-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]