GgaEX6042285 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18808739-18816601:-
Coord C1 exon
chr7:18816480-18816601
Coord A exon
chr7:18815040-18815223
Coord C2 exon
chr7:18808739-18808823
Length
184 bp
Sequences
Splice sites
3' ss Seq
ATATGTTCTGTTGTTTTCAGTGG
3' ss Score
8.89
5' ss Seq
ACCGTAAGC
5' ss Score
5.9
Exon sequences
Seq C1 exon
GCAGTGCTGTGTGGGAACAGAACTTGTTGACTGGATGATGCAGCAAAGTACTTGTGTCCATTCACGAAGTCAGGCTGTTGGCATGTGGCAAGTATTGCTGGAAGAAGGTGTTCTTAACCATG
Seq A exon
TGGACCAGGAACACCACTTTCAGGACAAATACTTATTTTATCGATTTTTGGATGATGAGCGTGAAGATGCCCCTTTGCCAACAGAGGAAGAGAAAAAGGAGTGTGATGAGGAGCTACAGGACACTATGCTGCTTCTGTCCCAGATTGGGCCAGATGCTCATATGAGGATGATTCTCAGAAAACC
Seq C2 exon
GCCTGGCCAGAGAAGTATAGATGATTTAGAAATTATATATGAAGAACTTCTTCACATTAAAGCCTTATCTCATCTTTCTACTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100)
A:
PF0061016=DEP=PD(21.1=24.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGCTGTGTGGGAACA
R:
TGTAGTAGAAAGATGAGATAAGGCTT
Band lengths:
207-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]