DreEX0060851 @ danRer10
Exon Skipping
Gene
ENSDARG00000079872 | rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
Coordinates
chr9:2971958-2975855:-
Coord C1 exon
chr9:2975734-2975855
Coord A exon
chr9:2974056-2974239
Coord C2 exon
chr9:2971958-2972042
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTTGATGTGTTCTGCTGCAGTGG
3' ss Score
6.2
5' ss Seq
ACAGTGCGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
GCGGAGCTGCATCGGCACTGAGCTCGTTGATTGGCTGTTGCAGCACACATCATGTGTTCACTCTCGTGTTCAGGCTGTAGGGATGTGGCAGGTGCTGCTGGAGGAGGGAGTGCTTAACCACG
Seq A exon
TGGACCAGGAGCCGACTTTCCAAGATAAATATCTGTTTTATCGCTTTCTGGATGACGAAAGTGAGGATTCAGGAATGCCGAGTGAGGAAGACAAGAAGGAGAGTGACGAAGAGCTGCAGGACACGCTTCTGCTGCTGTCTCAGATCGGCCCTGATGCTCATCTGCGGATGATCCTGCGCAAACA
Seq C2 exon
ACCCGGCCAGAGGACGGTCGATGACCTGGAGATCATTTATGAGGAGCTGCTGCACATTAAAGCCTTGTCCCATCTCTCCACCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079872-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100)
A:
PF0061016=DEP=PD(21.1=24.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTGAGCTCGTTGATTGG
R:
AGTGGTGGAGAGATGGGAC
Band lengths:
194-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]