MmuEX6102154 @ mm9
Exon Skipping
Gene
ENSMUSG00000049044 | Rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:MGI Symbol;Acc:MGI:1917723]
Coordinates
chr2:72016235-72033778:+
Coord C1 exon
chr2:72016235-72016356
Coord A exon
chr2:72017977-72018160
Coord C2 exon
chr2:72033694-72033778
Length
184 bp
Sequences
Splice sites
3' ss Seq
TGCCTCCATGTTTCCCGCAGTGG
3' ss Score
9.02
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
ACAATGCTGTGTTGGGACTGAGCTGGTAGACTGGATGATACAGCAGACATCCTGTGTTCACTCGCGGACTCAAGCTGTTGGCATGTGGCAAGTCTTGCTGGAAGATGGTGTCCTCAACCATG
Seq A exon
TGGACCAGGAGCGCCATTTCCAAGACAAATATTTATTTTATCGATTTCTGGATGACGAGCGTGAGGATGCCCCTTTGCCTACTGAGGAAGAGAAGAAGGAGTGTGATGAAGAACTTCAGGACACCATGCTGCTGCTCTCACAGATGGGCCCTGACGCCCACATGAGAATGATCCTGCGAAAACC
Seq C2 exon
ACCTGGCCAGAGGACTGTGGATGACCTAGAGATTATCTACGACGAGCTCCTTCATATTAAAGCCTTATCCCATCTCTCTACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049044-'23-19,'23-18,24-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.210 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100)
A:
PF0061016=DEP=PD(21.1=24.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTGTGTTGGGACTGAGC
R:
GTGGTAGAGAGATGGGATAAGGCT
Band lengths:
204-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: