BtaEX6009000 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020984 | RAPGEF4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:HGNC Symbol;Acc:HGNC:16626]
Coordinates
chr2:23716504-23738462:-
Coord C1 exon
chr2:23738341-23738462
Coord A exon
chr2:23736658-23736841
Coord C2 exon
chr2:23716504-23716588
Length
184 bp
Sequences
Splice sites
3' ss Seq
TGCCCCCATGTTTCCCGTAGTGG
3' ss Score
7.85
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
ACAGTGCTGTGTGGGGACCGAGCTGGTGGACTGGATGCTGCAGCAGACTCCATGTGTTCACTCCCGAACGCAAGCTGTGGGCATGTGGCAAGTCCTGGTAGAAGACAGCGTTCTCAACCATG
Seq A exon
TGGATCAGGAGCATCACTTCCAAGACAAATATTTATTTTATCGGTTTCTGGATGATGAGCATGAGGACGCCCCTTTGCCTACGGAGGAGGAAAAAAAGGAGTGTGATGAGGAGCTGCAGGACACCATGCTGCTGCTGTCGCAGATGGGCCCGGACGCCCACATGAGGATGGTCCTTCGCAAACC
Seq C2 exon
ACCTGGACAGAGGACCATGGATGACCTAGAAATTATCTATGAAGAACTCCTTCACATTAAAGCCTTATCCCATCTTTCTACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020984-'23-20,'23-18,24-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.274 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100)
A:
PF0061016=DEP=PD(21.1=24.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGCTGTGTGGGGAC
R:
TGTGGTAGAAAGATGGGATAAGGC
Band lengths:
207-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]