RnoEX6033807 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139246789-139248094:-
Coord C1 exon
chr7:139247973-139248094
Coord A exon
chr7:139247430-139247598
Coord C2 exon
chr7:139246789-139246873
Length
169 bp
Sequences
Splice sites
3' ss Seq
GCTACGCCTTGGCTCCCCAGTAA
3' ss Score
3.82
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
Exon sequences
Seq C1 exon
GCAGTGCTGCTCTGGCCGGGAGCTAGTGGATGGGATCTTGGCTCTGGGTCTTGGGGTCCACTCACGGAGCCAAGCTGTGGGCATCTGCCAGGTGTTGCTGGATGAGGGTGCCCTTTGCCATG
Seq A exon
TAAAACATGACTGGACCTTCCAGGACCGAGACGCCCAATTCTACAGATTCCCTGGACCGGAGCCCCAGCCTGCAGGAACTCATGACGTGGAAGAGGAGCTTGTTGAGGCAATGGCCCTACTCTCCCAGCGAGGGCCTGATGCCCTACTCACTGTTGCACTCCGGAAGTC
Seq C2 exon
CCCGGGTCAGCGTACAGATGAAGAGCTGGACCTCATCTTCGAGGAGCTGCTACATATCAAGGCGGTGGCTCACCTTTCTAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961-'11-16,'11-14,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.228 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100)
A:
PF0061016=DEP=PD(22.5=28.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGGGAGCTAGTGGAT
R:
CGAGTTAGAAAGGTGAGCCAC
Band lengths:
194-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]