BtaEX6021156 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006828 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chr5:32704084-32705173:+
Coord C1 exon
chr5:32704084-32704205
Coord A exon
chr5:32704352-32704520
Coord C2 exon
chr5:32705089-32705173
Length
169 bp
Sequences
Splice sites
3' ss Seq
CCTGGGCCTCTGCCCTGCAGTGA
3' ss Score
7.47
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GCAGTGCTGCTCCGGCCGGGAGCTGGTAGATGGGATCCTGGCCCTGGGGCTGGGCGTCCACTCCCGGAGCCAAGCCGTGGGTATCTGCCAGGTGCTCCTGGATGAAGGCGCCCTCTGCCATG
Seq A exon
TGAAACACGACTGGGCCTTCCAGGACCGAGACACCCAGTTCTACCGTTTCCCGGGGCCGGAGCCAGAGCCTGTGGGTGTCCATGAGCTAGAGGAAGAGCTGGTGGAGGCTCTGGCCCTGTTGTCCCAGCGGGGGCCCGATGCCCTGCTCACGGTGGCACTTCGAAAGCC
Seq C2 exon
CCCTGGTCAGCGCACAGATGAGGAGCTGGACCTCATCTTTGAGGAGCTGCTGCACATCAAGGCCGTGGCCCACCTCTCCAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006828-'6-8,'6-5,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100)
A:
PF0061016=DEP=PD(22.5=28.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGGGAGCTGGTAGAT
R:
CGAGTTGGAGAGGTGGGCC
Band lengths:
194-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]