GgaEX7011930 @ galGal4
Exon Skipping
Gene
ENSGALG00000006348 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chrLGE22C19W28_E50C23:433304-433972:+
Coord C1 exon
chrLGE22C19W28_E50C23:433304-433425
Coord A exon
chrLGE22C19W28_E50C23:433502-433676
Coord C2 exon
chrLGE22C19W28_E50C23:433888-433972
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTTCCCTCCCCGCAGTGA
3' ss Score
11.36
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GAGGTGCTGCTCCGGGAAGGAGCTGGTGGACTGGATGCTGAATGCAGAGCTGGGCATCCAGACGCGAAGCCAAGCCATCGGCGTGGGGCAGGTGCTGGTGGACGGCGGGGTCCTGACGCACG
Seq A exon
TGAAACAGGAGTGGCATTTCCAGGACAAGGACACCCAGTTCTATCGCTTTGCTGAGTTGGAGCTGAGCCCTGAGCCCCGCGTGGGGCTGCGGGATGCGGAGGAGCTGCTGGAGGCGGTGACCTTCCTGGCACAGCTGGGGCCCGATGCGCTGCTCACCATGGCCCTGCGCAAACC
Seq C2 exon
GCCTGCTCAGCGCACAGAGGACGAGCTGGAGCTCATCTTTGAGGAGCTGCTCCACATTAAAGCCGTGGCTCACCTCTCCAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-'12-7,'12-5,13-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=FE(57.7=100)
A:
PF0061016=DEP=PD(22.5=27.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCTGCTCCGGGAAG
R:
CGAGTTGGAGAGGTGAGCCA
Band lengths:
207-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]