RnoEX6033808 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139246054-139247598:-
Coord C1 exon
chr7:139247430-139247598
Coord A exon
chr7:139246789-139246873
Coord C2 exon
chr7:139246054-139246114
Length
85 bp
Sequences
Splice sites
3' ss Seq
AGCTTCCTCTGCTCCTGCAGCCC
3' ss Score
8.04
5' ss Seq
TCGGTCAGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
TAAAACATGACTGGACCTTCCAGGACCGAGACGCCCAATTCTACAGATTCCCTGGACCGGAGCCCCAGCCTGCAGGAACTCATGACGTGGAAGAGGAGCTTGTTGAGGCAATGGCCCTACTCTCCCAGCGAGGGCCTGATGCCCTACTCACTGTTGCACTCCGGAAGTC
Seq A exon
CCCGGGTCAGCGTACAGATGAAGAGCTGGACCTCATCTTCGAGGAGCTGCTACATATCAAGGCGGTGGCTCACCTTTCTAACTCG
Seq C2 exon
GTGAAACGGGAACTAGCTGCTGTTCTGCTCTTTGAACCACACAGCAAGGCAGGAACTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961-'12-17,'12-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.228 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=PD(22.5=28.1)
A:
NO
C2:
PF0002724=cNMP_binding=PU(8.2=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGACGCCCAATTCTACAG
R:
CAGAACAGCAGCTAGTTCCCG
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]