BtaEX0029755 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63406722-63409712:-
Coord C1 exon
chr17:63409559-63409712
Coord A exon
chr17:63409107-63409171
Coord C2 exon
chr17:63406722-63406914
Length
65 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCTCTGTCCTCTCAGCTG
3' ss Score
9.17
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGGATGCCGCCAGCCCCTTGGCTGTCCTGGAGGAGTTGACCTCGGGTGACTGCCGCCAGGAGCTGGCCACCAAGCTGGTGAAGCTCTTTCTGGGCCAGGGCCTGACTGGGCCCTTTCTGGACTATCTCACCCGGCGCGAGGTGGCTCGGACCA
Seq A exon
CTGACCCCAACACCCTCTTCCGTTCTAACTCCCTGGCGTCCAAGTCAGTGGAGCAGTTTATGAAG
Seq C2 exon
GAGAATCTCCTTCAAGGGTGCACCCTCCGAGGAACACGTGCGTGAGGCCAGCCTGGGGCTGCTGACGGGCTACCTGGGGCCTATTGTGGACGCCATTGTGGGCTCCGTGGGGCGCTGCCCATCCGCCATGCGCCTCGCCTTCAAGCAGCTGCGCCAGCGCGTGGAGGAGCGTTTTCCCCAGGCGGAGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739_MULTIEX2-6/7=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.0)
A:
PF0061614=RasGAP=FE(11.1=100)
C2:
PF0061614=RasGAP=FE(33.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGAAGCTCTTTCTGGGC
R:
TCCACAATAGGCCCCAGGTAG
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development