HsaEX6069269 @ hg38
Exon Skipping
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr12:113114800-113115788:-
Coord C1 exon
chr12:113115635-113115788
Coord A exon
chr12:113115200-113115264
Coord C2 exon
chr12:113114800-113114912
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACTTCCTCCTGTCCTCCCAGTGG
3' ss Score
9.48
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGGACACTGCTAGCCCCTTGGCTTTGCTGGAAGAGCTGACCTTGGGGGACTGCCGCCAGGACCTTGCCACCAAGCTGGTGAAACTCTTTCTTGGCCGGGGACTGGCTGGGCGCTTTCTGGACTATCTCACCCGGCGTGAGGTGGCTCGGACCA
Seq A exon
TGGACCCCAACACCCTCTTCCGTTCTAACTCCCTGGCATCCAAGTCGATGGAACAGTTTATGAAG
Seq C2 exon
CTCGTGGGCATGCCCTACCTGCACGAGGTCCTGAAGCCTGTGATTAGCCGTGTCTTTGAGGAGAAGAAGTACATGGAGCTGGATCCCTGCAAGATGGACCTGGGCCGCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344-'19-23,'19-20,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.0)
A:
PF0061614=RasGAP=FE(11.1=100)
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACTCTTTCTTGGCCGGG
R:
CATCTTGCAGGGATCCAGCTC
Band lengths:
171-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains