RnoEX6064626 @ rn6
Exon Skipping
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41431291-41432211:-
Coord C1 exon
chr12:41432058-41432211
Coord A exon
chr12:41431652-41431716
Coord C2 exon
chr12:41431291-41431403
Length
65 bp
Sequences
Splice sites
3' ss Seq
CACCTTCCCTATCCTCCCAGATG
3' ss Score
9.75
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAGGACACCACCAGCCCCCTGGCATTGCTAGAGGAGTTGGCCTCTGGGGACTGTCGTCAGGACCTTGCCACCAAACTGGTGAAGCTTTTCCTGGGCCGGGGCCTGGCTGGGCCCTTTCTAGATTACCTCACAAGGCGTGAGGTGGCACGAACCA
Seq A exon
ATGACCCCAACACCCTCTTCCGTTCTAACTCCTTGGCATCCAAGTCGATGGAACAGTTCATGAAA
Seq C2 exon
CTCGTGGGCATGCGCTACCTGCATGAGGTCCTGAGGCCGGTGATCAGCCGCGTCTTCGAGGAGAAGAAATATATGGAGCTGGACCCTTCCAAGATGGACCTGAACCGCTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374-'18-23,'18-18,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.091 C2=0.026
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.0)
A:
PF0061614=RasGAP=FE(11.1=100)
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGCTAGAGGAGTTGGCC
R:
CTGATCACCGGCCTCAGGA
Band lengths:
180-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]