MmuEX6020429 @ mm9
Exon Skipping
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:121113980-121114867:+
Coord C1 exon
chr5:121113980-121114133
Coord A exon
chr5:121114455-121114519
Coord C2 exon
chr5:121114755-121114867
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACATCTCCCTATTCTCCCAGATG
3' ss Score
8.63
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGGACACCACCAGCCCCCTGGCTCTGCTAGAGGAGCTGGCCTCTGGGGACTGTCGTCAGGACCTTGCCACCAAGCTGGTGAAGCTGTTCCTGGGCCGGGGCCTGGCCGGGCCCTTTCTAGATTATCTCACAAGGCGTGAGGTGGCTCGAACCA
Seq A exon
ATGACCCCAACACCCTCTTCCGTTCTAACTCCTTGGCATCCAAGTCGATGGAACAGTTCATGAAG
Seq C2 exon
CTCGTGGGCATGCGCTACCTGCACGAGGTCCTGAGGCCAGTGATCAGCCGCGTCTTCGAGGAGAAGAAATATATGGAACTGGACCCTTGCAAGATGGACCTGAACCGCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-'17-17,'17-15,18-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.0)
A:
PF0061614=RasGAP=FE(11.1=100)
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGAAGCTGTTCCTGGG
R:
GTCCATCTTGCAAGGGTCCAG
Band lengths:
178-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: