BtaEX0031062 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005980 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr23:47930849-47950606:-
Coord C1 exon
chr23:47950517-47950606
Coord A exon
chr23:47949285-47949448
Coord C2 exon
chr23:47930849-47930993
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTGATCCTTGCTTTCCGCAGCAC
3' ss Score
8.83
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGACGAAAGAGGAGAAGTCTTCCTACAACTGCCCCCTGTGCGAGAAGGTCTGCACCACCCAGCACCAGCTAACCATGCACATTCGCCAG
Seq A exon
CACAACACGGACACGGGCGGGGCCGACCACTCGTGCAGCATCTGCGGGAAGTCGCTGAGCTCGGCCAGCTCCCTGGACCGGCACATGCTGGTGCACTCCGGGGAGAGGCCCTACAAGTGCACCGTGTGCGGGCAGTCCTTCACCACCAACGGGAACATGCACAG
Seq C2 exon
ACACATGAAGATCCACGAGAAGGACCCCAACAGCTCTCCAGCCGCAGCCCCCCCATCCCCACTGAAGCGCAGGCGGCTGTCCTCCAAGAGGAAACTGAGTCATGACGTGGAGTCGGAGAAGGAAGACCCAGCGCCAGCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005980_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.473 C2=1.000
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PU(91.3=70.0)
A:
PF0009621=zf-C2H2=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=47.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGAAAGAGGAGAAGTCTTCCT
R:
CTTTTTGGCTGGCGCTGGG
Band lengths:
234-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development