GgaEX0019352 @ galGal4
Exon Skipping
Gene
ENSGALG00000012799 | RREB1
Description
ras-responsive element-binding protein 1 [Source:RefSeq peptide;Acc:NP_990380]
Coordinates
chr2:64773463-64792926:-
Coord C1 exon
chr2:64792837-64792926
Coord A exon
chr2:64791340-64791503
Coord C2 exon
chr2:64773463-64773607
Length
164 bp
Sequences
Splice sites
3' ss Seq
CAAATCATTGCTTTCTCTAGCAT
3' ss Score
5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAAACAAAAGAAGAGAAGTCTTCCTATACCTGTCCTCTGTGTGAAAAGATTTGCACTACACAGCACCAGCTAACTATGCACATTCGTCAG
Seq A exon
CATAACACTGACACTGGAGGGACAGACCATTCCTGCAGCATCTGTGGAAAGTCTCTGAGCTCAGCGAGCTCCCTTGATCGCCACATGCTGGTGCACTCAGGTGAAAGGCCTTATAAATGTTCAGTGTGTGGACAGTCCTTCACCACCAATGGAAACATGCACAG
Seq C2 exon
GCACATGAAGATTCACGAGAAGGATCCAAACAGCACGGCGAGCACAACTCCCCCATCTCCACTGAAGCGCAAGCGATTGTCTTCAAAGCGGAAGTTCAGTCAAGATGCTGAGATGGACAGAGAGGAAAGGACACCTGCAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012799_MULTIEX1-2/9=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.256 A=0.327 C2=1.000
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PU(91.3=70.0)
A:
PF0009621=zf-C2H2=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=47.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGTCTTCCTATACCTGTCCT
R:
TGCAGGTGTCCTTTCCTCTCT
Band lengths:
218-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]