MmuEX6057945 @ mm9
Exon Skipping
Gene
ENSMUSG00000039087 | Rreb1
Description
ras responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:2443664]
Coordinates
chr13:37990281-38008029:+
Coord C1 exon
chr13:37990281-37990370
Coord A exon
chr13:37991493-37991656
Coord C2 exon
chr13:38007891-38008029
Length
164 bp
Sequences
Splice sites
3' ss Seq
TGTCCCGATTGCTTCTGCAGCAC
3' ss Score
8.03
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAAACGAAAGAGGAGAAGTCTTCCTACAACTGTCCCCTATGTGAAAAGATTTGCACCACCCAGCACCAGCTGACCATGCACATCCGTCAG
Seq A exon
CACAACACAGACACGGGAGGAGCTGACCACGCATGCAGTATCTGTGGGAAGTCGCTGAGCTCGGCCAGCTCCCTGGATCGTCACATGCTGGTGCACTCTGGCGAGAGGCCTTACAAGTGTACAGTGTGTGGCCAGTCTTTCACCACCAATGGGAACATGCACAG
Seq C2 exon
ACATATGAAGATTCATGAGAAGGATACCAACAGTACTACAGCTGCAGCCCCTCCATCCCCTCTGAAGCGCAGGCGGTTGTCCTCCAAAAGGAAGCTGAGTCACGATGCCGAGTCAGAAGACCCAGGACCAGCTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039087-'18-16,'18-13,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=0.360 C2=1.000
Domain overlap (PFAM):
C1:
PF047109=Pellino=FE(28.7=100),PF138941=zf-C2H2_4=PU(87.5=70.0)
A:
PF047109=Pellino=FE(53.5=100),PF138941=zf-C2H2_4=PD(4.2=1.8),PF134651=zf-H2C2_2=WD(100=47.3)
C2:
PF047109=Pellino=PD(5.9=12.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAAGAGGAGAAGTCTTCCT
R:
CTTTTTAGCTGGTCCTGGGTCT
Band lengths:
226-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: