RnoEX0077186 @ rn6
Exon Skipping
Gene
ENSRNOG00000015701 | Rreb1
Description
ras responsive element binding protein 1 [Source:RGD Symbol;Acc:1310904]
Coordinates
chr17:27572208-27593599:-
Coord C1 exon
chr17:27593510-27593599
Coord A exon
chr17:27592203-27592366
Coord C2 exon
chr17:27572208-27572352
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTACCGACTGCTTTCTGCAGCAC
3' ss Score
5.69
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAAACGAAAGAGGAGAAGTCTTCCTACAACTGTCCCCTATGTGAAAAGGTCTGCACTACCCAGCACCAGCTGACCATGCACATCCGTCAG
Seq A exon
CACAACACAGACACTGGAGGAGCTGACCACTCATGCAGCATCTGTGGGAAGTCGCTGAGCTCTGCCAGCTCCCTGGATCGTCACATGCTGGTGCACTCTGGCGAGAGGCCTTACAAGTGCACAGTGTGTGGCCAGTCGTTCACCACCAATGGCAACATGCACAG
Seq C2 exon
ACATATGAAGATTCATGAGAAGGATACCAACAGTACTACAGCTGCAGCCCCTCCGTCCCCTCTGAAGCGTAGGCGGTTGTCCTCCAAAAGGAAACTGAGTCACGATGCCGAGTCAGAAAGAGAAGACCCAGGACCAGCTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015701-'17-16,'17-15,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=0.436 C2=1.000
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PU(91.3=70.0)
A:
PF0009621=zf-C2H2=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=47.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGAAAGAGGAGAAGTCTTCCT
R:
CTTTTTAGCTGGTCCTGGGTCT
Band lengths:
234-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]