DreEX6026550 @ danRer10
Exon Skipping
Gene
ENSDARG00000042652 | rreb1b
Description
ras responsive element binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-070912-273]
Coordinates
chr2:21390587-21394684:+
Coord C1 exon
chr2:21390587-21390676
Coord A exon
chr2:21390831-21390994
Coord C2 exon
chr2:21394540-21394684
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTCACATCTTCTTTCTGCAGCAC
3' ss Score
9.73
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GAAGTCAAAGATGAACGTTCCAGCTTCATTTGCCCCCTGTGTGACAAAAACTGCATGACGCAGCACCAGCTCACCATGCACATCAGACAG
Seq A exon
CACAACACGGACAGTGGTGGCACTGACCACTCGTGCAGTATTTGCGGAAAGGCTTTGAGTTCGGCCAGCTCTCTGGACCGACACATGCTGGTTCACAGCGGAGAAAGACCATACAAGTGCTCGGTCTGCGGTCAGACATTCACCACCAATGGAAACATGCACAG
Seq C2 exon
GCACATGAAAATTCATGAAAAGGATTCAAGCGGTATTCCTACCCCCAGTTCTTCCCCACTAAACAAGCGCAGACGACTCTCCAGCAAGAGGAAACCCAGTGTGGAGGATGAAGGAGAGCAGGCTGAGGAGCCACCAGTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042652-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.473 C2=1.000
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=PU(87.5=70.0)
A:
PF138941=zf-C2H2_4=PD(4.2=1.8),PF134651=zf-H2C2_2=WD(100=47.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCAAAGATGAACGTTCCAGC
R:
TTTTTAACTGGTGGCTCCTCAGC
Band lengths:
234-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]