BtaEX0031618 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001828 | SCRN2
Description
Bos taurus secernin 2 (SCRN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205804]
Coordinates
chr19:39237868-39239512:+
Coord C1 exon
chr19:39237868-39238049
Coord A exon
chr19:39238652-39238851
Coord C2 exon
chr19:39239297-39239512
Length
200 bp
Sequences
Splice sites
3' ss Seq
CCCTGGACTCTTTGTGCCAGGCT
3' ss Score
5.64
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGCACCTACATTGAGGTGGAACAGGTGTCCAAGACCCATGCTGTGATCCTGAGCCGCCCTTCTTGGCTGTGGGGGGCTGAGATGGGTGCCAACGAGCATGGTGTCTGCATTGGCAATGAGGCAGTGTGGACCAAGGAGCCAGTCGGGGAAGGGGAAGCCCTGCTGGGAATGGACTTACTCAG
Seq A exon
GCTGGCTTTGGAACGGGGCAGCTCTGCCCGGGAGGCCTTGCACGTGATCACAGGCTTGCTGGAGCGCTACGGGCAGGGGGGCAGCTGCCGGGAGGACCCCACGCCATTCTGCTACCACAACACTTTCCTGCTGGCCGACCGGACTGAGGCCTGGGTGCTGGAGACGGCGGGGAGGCTGTGGGCTGCACGGAGGATCCAGG
Seq C2 exon
AGGGGGTCCACAACATCTCCAACCAGCTGAGCATCGGCTCGGACATCTCGGCAGAACACCCTGAGCTCCGGCCCCACGCCCAGGTCCAGGGCTGGTGGGACGGGCAGGGCACCTTTGACTTTGCCCAGGTCTTCTCCCTGAGCCAGCAGCCTGTGCGCATGGAGGCTGCCAAGGCCCGCTTCCGGGCCGGGCAGGAGCTGCTGCAGCAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001828_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(24.3=100)
A:
PF0357710=Peptidase_C69=FE(27.1=100)
C2:
PF0357710=Peptidase_C69=FE(29.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAACAGGTGTCCAAGA
R:
ACCTGGGCAAAGTCAAAGGTG
Band lengths:
299-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development