HsaEX0056645 @ hg38
Exon Skipping
Gene
ENSG00000141295 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr17:47838791-47840372:-
Coord C1 exon
chr17:47840191-47840372
Coord A exon
chr17:47839444-47839643
Coord C2 exon
chr17:47838791-47839006
Length
200 bp
Sequences
Splice sites
3' ss Seq
TTGGCCCTCTCTTTTGCCAGGCT
3' ss Score
8.01
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGCACCTACATTGAAGTGGAACAGGTGTCGAAGACGCACGCTGTGATTCTGAGCCGTCCTTCTTGGCTATGGGGGGCTGAGATGGGCGCCAACGAGCATGGTGTCTGCATTGGCAACGAGGCTGTGTGGACGAAGGAGCCAGTTGGGGAGGGGGAAGCCCTGCTGGGCATGGACCTACTCAG
Seq A exon
GCTGGCTTTGGAACGGAGCAGCTCTGCCCAGGAGGCCTTGCATGTGATCACAGGGTTACTGGAGCACTATGGGCAGGGGGGCAACTGCCTGGAGGATGCTGCGCCATTCTCCTACCATAGCACCTTCCTGCTGGCTGACCGCACTGAGGCGTGGGTGCTGGAGACAGCTGGGAGGCTCTGGGCTGCACAGAGGATCCAGG
Seq C2 exon
AGGGGGCCCGCAACATCTCCAACCAGCTGAGCATTGGCACGGACATCTCGGCCCAACACCCGGAGCTGCGGACTCATGCCCAGGCCAAGGGCTGGTGGGATGGGCAGGGTGCCTTTGACTTTGCTCAGATCTTCTCCCTGACCCAGCAGCCTGTGCGCATGGAGGCTGCCAAGGCCCGCTTCCAGGCAGGGCGGGAGCTGCTGCGGCAACGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141295-'5-9,'5-7,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.090
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(25.4=100)
A:
PF0357710=Peptidase_C69=FE(28.4=100)
C2:
PF0357710=Peptidase_C69=PD(30.1=97.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACGCACGCTGTGATTCT
R:
GCTGGGTCAGGGAGAAGATCT
Band lengths:
300-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development