GgaEX7011010 @ galGal4
Exon Skipping
Gene
ENSGALG00000011945 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr27:3894686-3895464:+
Coord C1 exon
chr27:3894686-3894867
Coord A exon
chr27:3894943-3895142
Coord C2 exon
chr27:3895249-3895464
Length
200 bp
Sequences
Splice sites
3' ss Seq
CGGGTGCTGCCGTGCTGCAGGCT
3' ss Score
6.58
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TGCACCTACATCGAGATCGAGCAGGCGGAACGGACCCACGCGGTGGTGCTGAGCCGTCCCGCCTGGCTGTGGGGCGCCGAGATGGGTGCCAACGAGCACGGGGTCTGCGTGGGCAATGAGGGCGTTTGGACCCGGGAGCCTGTCGGGGAGGGTGAGGCGCTGCTGGGCATGGATTTGGTGAG
Seq A exon
GCTGGGCTTGGAGAGGGGCGGCTCTGCCAGGGAAGCGCTGGAGGTGATCACGGCGCTGCTGGAGCAGCACGGGCAGGGTGGGAGCTGCAAGGAGGAGCCGATACCCTTTGTGTACCACAACACCTTCCTGCTGGCTGACCGCCACGAGGCCTGGGTGCTGGAGACGGCCGGCCGCTACTGGGCAGCCCAACGGATCCAAG
Seq C2 exon
AGGGCAGCCGCAACATCTCCAACCAGCTCAGCATCGGGACGGACATCACAGCTGAGCACCCAGGGCTGCGGCAGCGAGCCCAGAGCCAGGGCTGGTGGAGCGGGGTCGGCCAGTTCAGCTTTGCTGAGGTTTTCTCCCTGGCACAGCAGCCGCCACGCATGGAGGCTGCCAAGAGCCGCTATCGTGCTGGCAAGGAGCTGCTGCAGCAGCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011945-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.015 C2=0.178
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(25.1=88.5)
A:
PF0357710=Peptidase_C69=FE(31.2=100)
C2:
PF0357710=Peptidase_C69=FE(33.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGGGTGCCAACGAGC
R:
CTCCTTGCCAGCACGATAGC
Band lengths:
301-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]