BtaEX0031851 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024394 | SEMA3D
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:HGNC Symbol;Acc:HGNC:10726]
Coordinates
chr4:35746445-35789896:+
Coord C1 exon
chr4:35746445-35746559
Coord A exon
chr4:35747746-35747815
Coord C2 exon
chr4:35789471-35789896
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTTCCCATTAATAGAAG
3' ss Score
6.93
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AATGATGTAGGAGGACAACGCAGCCTGATAAACAAATGGACCACTTTTCTCAAGGCCAGATTGATTTGCTCAATTCCTGGAAGTGATGGGGCAGATACTCATTTTGATGAGCTTC
Seq A exon
AAGACATTTACTTACTCCCCACGAGAGATGAAAGAAATCCTGTAGTGTATGGAGTCTTTACCACAACCAG
Seq C2 exon
GTAAAACCCGATGAAAGGATCATCAAAACAGAATATGGGCTACTGATTCGAAGTCTGCAGAAGAAGGACTCTGGGCTGTATTACTGCAAAGCACAGGAGCACACTTTTATCCACACCATAGTGAAGCTGACTTTGAATATCATTGAGAATGAACAGATGGAAAACACCCAGAGGGCAGAGCATGAGGAGGGGCCAGTCAAGGATTTGTTGGCTGAGTCAAGGTTGAGATATAAAGACTACATCCAAATCCTTAGCAGTCCAAACTTCAGCCTAGACCAGTACTGTGAACAGATGTGGCACAGGGAGAAGCGGAGACAGCGGAACAAGGGCAGCCCGAAGTGGAAGCACATGCAGGAAATGAAGAAGAAACGAAATCGAAGACATCACAGAGACCTGGAAGAACTTCCTAGAGCTGTGGCCACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024394_MULTIEX1-10/18=9-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.411
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.5=100)
A:
PF0140314=Sema=FE(5.6=100)
C2:
PF0768612=V-set=PD(55.4=35.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCACTTTTCTCAAGGCCA
R:
GTGCTCCTGTGCTTTGCAGTA
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development