RnoEX6012473 @ rn6
Exon Skipping
Gene
ENSRNOG00000007202 | Sema3d
Description
semaphorin 3D [Source:RGD Symbol;Acc:727939]
Coordinates
chr4:19259117-19265378:-
Coord C1 exon
chr4:19265264-19265378
Coord A exon
chr4:19264150-19264219
Coord C2 exon
chr4:19259117-19259261
Length
70 bp
Sequences
Splice sites
3' ss Seq
AATTATTTTTCCATTAACAGAAG
3' ss Score
7.17
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AATGATGTGGGTGGGCAGCGGAGTCTGATAAACAAATGGACTACTTTTCTTAAGGCAAGACTGGTTTGCTCAATTCCTGGAAGTGATGGGGCAGATACTCACTTTGATGAACTTC
Seq A exon
AAGATATTTACTTACTCCCTACGAGAGATGAAAGAAATCCTGTTGTGTATGGAGTCTTTACCACAACCAG
Seq C2 exon
TTCCATCTTCAAAGGCTCTGCTGTCTGTGTGTACAGCATGGCTGATATCAGAGCAGTTTTTAACGGTCCCTATGCTCATAAGGAAAGTGCAGACCATCGTTGGGTGCAATATGATGGAAGGATACCTTATCCCCGACCCGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007202-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.5=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAGACTGGTTTGCTCAA
R:
CCCAACGATGGTCTGCACTTT
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]