GgaEX6000370 @ galGal4
Exon Skipping
Gene
ENSGALG00000006563 | SEMA3D
Description
Semaphorin-3D [Source:UniProtKB/Swiss-Prot;Acc:Q90663]
Coordinates
chr1:8281858-8284673:+
Coord C1 exon
chr1:8281858-8281972
Coord A exon
chr1:8283826-8283895
Coord C2 exon
chr1:8284529-8284673
Length
70 bp
Sequences
Splice sites
3' ss Seq
CAATATTTTTCCCATTACAGAAG
3' ss Score
6.94
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AATGATATGGGAGGTCAACGGAGCCTAATAAACAAATGGACGACTTTTCTGAAAGCCAGGCTTGTGTGTTCAATACCTGGTCCTGAAGGAGCTGACACACATTTTGATGAGCTGC
Seq A exon
AAGATATATTCTTACTTTCTACAAGAGATGAGAGAAACCCTCTTGTATATGGAGTCTTCACTACAACAAG
Seq C2 exon
CTCCGTCTTCAAGGGCTCTGCAGTTTGTGTGTACAGCATGGCAGATATCAGAGCTGTTTTCAATGGCCCTTATGCTCACAAAGAGAGTGCGGATCATCGATGGGTTCAATACGAAGGTCGTATCCCCTATCCCAGACCTGGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006563-'18-23,'18-22,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.0=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGGCTTGTGTGTTCAAT
R:
TTGAACCCATCGATGATCCGC
Band lengths:
171-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]