HsaEX0057063 @ hg19
Exon Skipping
Gene
ENSG00000153993 | SEMA3D
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:HGNC Symbol;Acc:10726]
Coordinates
chr7:84666205-84671601:-
Coord C1 exon
chr7:84671487-84671601
Coord A exon
chr7:84669989-84670058
Coord C2 exon
chr7:84666205-84666349
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTCCCCTTTAATAGAAG
3' ss Score
7.48
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AATGATGTAGGAGGACAACGCAGCCTGATAAACAAGTGGACGACTTTTCTTAAGGCCAGACTGATTTGCTCAATTCCTGGAAGTGATGGGGCAGATACTTACTTTGATGAGCTTC
Seq A exon
AAGATATTTATTTACTCCCCACAAGAGATGAAAGAAATCCTGTAGTATATGGAGTCTTTACTACAACCAG
Seq C2 exon
CTCCATCTTCAAAGGCTCTGCTGTTTGTGTGTATAGCATGGCTGACATCAGAGCAGTTTTTAATGGTCCATATGCTCATAAGGAAAGTGCAGACCATCGTTGGGTGCAGTATGATGGGAGAATTCCTTATCCACGGCCTGGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153993-'11-15,'11-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.5=100)
A:
PF0140314=Sema=FE(5.2=100)
C2:
PF0140314=Sema=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTAGGAGGACAACGCAGC
R:
ACTGCTCTGATGTCAGCCATG
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)