DreEX6064382 @ danRer10
Exon Skipping
Gene
ENSDARG00000017369 | sema3d
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:ZFIN;Acc:ZDB-GENE-990715-2]
Coordinates
chr18:9258260-9260092:+
Coord C1 exon
chr18:9258260-9258374
Coord A exon
chr18:9258472-9258541
Coord C2 exon
chr18:9259948-9260092
Length
70 bp
Sequences
Splice sites
3' ss Seq
TATGTGTGTGTGTGTTACAGAGG
3' ss Score
9.52
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AACGATGTTGGAGGTTTGAGAAGTCTTACTAACAAGTGGACAACATTTCTCAAAGCGAGACTCGTGTGCTCCATTCCTGGACCAGATGGAGTGGACACACACTTTGATGAGCTCC
Seq A exon
AGGACATCTTTCTTCTCCCTAGCAGAGATGAGAAAAACCCTATGGTGTATGGAGTGTTCACCACTACCAG
Seq C2 exon
TTCCATCTTTAAAGGATCAGCAGTGTGCGTCTATACAATGGAAGACATCCGTGCAGCGTTTAATGGACCGTATGCTCATAAAGAGGGACCAGATCATCGCTGGGTGGAATATGAAGGCAGAATTCCCTACCCACGTCCAGGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017369-'12-11,'12-9,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.1=100)
A:
PF0140314=Sema=FE(4.9=100)
C2:
PF0140314=Sema=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGATGGAGTGGACACACA
R:
GACGTGGGTAGGGAATTCTGC
Band lengths:
172-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]