BtaEX0032108 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007955 | SEZ6L2
Description
Bos taurus seizure related 6 homolog (mouse)-like 2 (SEZ6L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045927]
Coordinates
chr25:26637869-26638863:+
Coord C1 exon
chr25:26637869-26638060
Coord A exon
chr25:26638525-26638563
Coord C2 exon
chr25:26638746-26638863
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTCCTCTCCCTGCAGTGG
3' ss Score
11.81
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGAAGTACGAGCCGTGCCTGAACCCTGGGGTGCCAGAGAATGGCTACCAGACACTATACAAGCATCACTACCAGGCTGGCGAGTCTCTGCGCTTCTTCTGCTATGAGGGCTTTGAGCTCATCGGCGAGGTCACCATCACCTGTGTGCCCGGCCACCCCTCCCAGTGGACCAGCCAGCCTCCACTCTGCAAAG
Seq A exon
TGGCCTTTGAGGAGCTCCTGGACAACCGAAAACTGGAAG
Seq C2 exon
TGACCCAGACCACTGACCCGTCACGGCAGCTGGAGGGTGGAAACCTCGCCTTGGCCATTCTGCTGCCCCTGGGCTTGGTCATCATCCTTGGGAGTGGTGTTTACATATACTACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007955_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.071 C2=0.113
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=89.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000010460fB6282
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCTCCACTCTGCAAAG
R:
CCCAAGGATGATGACCAAGCC
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development