RnoEX0079978 @ rn6
Exon Skipping
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198400303-198401324:+
Coord C1 exon
chr1:198400303-198400494
Coord A exon
chr1:198400987-198401025
Coord C2 exon
chr1:198401207-198401324
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTCCTCTCCCTGCAGTGG
3' ss Score
11.81
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TAAAGTACGAGCCATGCCTGAACCCCGGCGTTCCTGAGAATGGCTACCAGACATTGTACAAGCATCATTACCAAGCGGGGGAGTCACTACGCTTCTTCTGCTATGAGGGCTTTGAGCTCATCGGCGAGGTCACCATCACCTGTGTACCTGGGCACCCCTCCCAGTGGACAAGCCAGCCCCCACTCTGCAAAG
Seq A exon
TGGCCTATGAGGAACTCCTGGACAACCGAAAACTGGAAG
Seq C2 exon
TGACCCAGACTACAGATCCATCACGGCAGCTGGAGGGTGGGAATCTCGCTTTGGCTATCCTGTTGCCCCTGGGCTTGGTCATTGTCCTTGGCACTGGTGTTTACATATACTACACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.150
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=89.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCACCTGTGTACCTGGG
R:
CAAAGCGAGATTCCCACCCTC
Band lengths:
114-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]