MmuEX0041895 @ mm10
Exon Skipping
Gene
ENSMUSG00000030683 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:MGI Symbol;Acc:MGI:2385295]
Coordinates
chr7:126967014-126968044:+
Coord C1 exon
chr7:126967014-126967205
Coord A exon
chr7:126967707-126967745
Coord C2 exon
chr7:126967927-126968044
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTCCTCTCCCTGCAGTGG
3' ss Score
11.81
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TAAAGTACGAGCCGTGCCTGAACCCCGGTGTTCCTGAGAATGGTTACCAAACTCTGTACAAGCATCACTACCAAGCGGGCGAGTCGCTACGCTTCTTCTGCTACGAGGGCTTTGAGCTCATCGGCGAGGTCACCATCACATGTGTACCCGGTCACCCCTCCCAGTGGACCAGCCAGCCCCCACTCTGCAAAG
Seq A exon
TGGCCTATGAGGAGCTCCTGGACAACCGAAAACTGGAAG
Seq C2 exon
TGACCCAGACTACAGACCCATCACGGCAGCTGGAGGGTGGTAATCTCGCTTTGGCCATCCTGTTGCCCCTGGGCTTGGTCATTGTCCTTGGCATTGGCGTTTACATATACTACACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030683_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.005 A=0.071 C2=0.117
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=89.2)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATCACATGTGTACCCGG
R:
CAGGATGGCCAAAGCGAGATT
Band lengths:
124-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types