BtaEX0032288 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013857 | SH2D3A
Description
Bos taurus SH2 domain containing 3A (SH2D3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001205669]
Coordinates
chr7:18958065-18958708:+
Coord C1 exon
chr7:18958065-18958180
Coord A exon
chr7:18958339-18958513
Coord C2 exon
chr7:18958597-18958708
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTTGCCCTCCGCCTCTACAGGCT
3' ss Score
9.67
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GCCACAGGTGTCCTGGGAGTGACCAAGGCTCAGCGGGGCGCCATGGGGGTCGCCTCCGGTCTGGAGCTGCTCACACTTCCCCACGGGCATCGCTTGAGATTGGAATTGCTGGAGAG
Seq A exon
GCTCGAGACGCTGGCGTTGGCGGGGGCGCTGGCAGTGCTGGGCTGCGCAGGGCCGCTGGAAGAACGCGCGGCCGCCCTGAGGGGCCTGGTGGAGCTGGCCGTGGCGCTGCGGCCAGGGGCGGTGGGGGACCTGCCCGGACTGGCCGCGGTGATGGGCGCCTTGCTCATGCCCCAG
Seq C2 exon
GTGTCGCGTTTGGAACGCACGTGGCGCCACCTGCGAAGGAGCCACACGGAGGCTGCGCTGGCCTTTGAGCAGGAGCTGAAGCCGCTGATGCGATCGCTGAATGAGGGCGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013857-'8-13,'8-12,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.263
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(6.7=20.5)
A:
PF0061714=RasGEF=FE(48.3=100)
C2:
PF0061714=RasGEF=FE(30.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTCCTGGGAGTGACCAA
R:
CCCTCATTCAGCGATCGCATC
Band lengths:
218-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development