BtaEX0033323 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34715808-34742419:-
Coord C1 exon
chr2:34742281-34742419
Coord A exon
chr2:34727396-34727556
Coord C2 exon
chr2:34715808-34715996
Length
161 bp
Sequences
Splice sites
3' ss Seq
GATATTATTTATTTGTATAGGTG
3' ss Score
6.28
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
ACACCCCATCACAGCGAGTACAGTTTATTCTTGGGACTGAGGATGATGATGAGGAGCACATTCCTCATGACCTCTTCACAGAACTCGATGAGATTTGCTGGCGTGAAGGTGAGGATGCTGAGTGGCGAGAAACAGCCAG
Seq A exon
GTGGTTGAAGTTTGAAGAAGATGTGGAAGATGGAGGGGAAAGGTGGAGCAAGCCTTATGTGGCTACTCTTTCACTGCACAGCTTATTTGAGTTAAGAAGTTGTATTCTGAATGGAACTGTGTTGCTGGACATGCATGCCAATACTTTAGAAGAAATTGCAG
Seq C2 exon
ATATGGTCCTTGACCAACAAGTGAGCTCAGGTCAGCTCAATGAGGATGTACGCCACAGGGTCCACGAGGCTCTGATGAAACAGCATCACCACCAGAATCAGAAGAAGCTCACCAATAGGATTCCCATTGTTCGTTCCTTTGCTGATATTGGCAAGAAACAATCAGAACCAAATTCCATGGATAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=0.018 C2=0.766
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(16.2=85.5)
C2:
PF075658=Band_3_cyto=FE(21.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCATCACAGCGAGTACAG
R:
TCTTCTGATTCTGGTGGTGATGC
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development