HsaEX6016238 @ hg38
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161839789-161863062:+
Coord C1 exon
chr2:161839789-161839927
Coord A exon
chr2:161854970-161855130
Coord C2 exon
chr2:161862874-161863062
Length
161 bp
Sequences
Splice sites
3' ss Seq
GATAATATTTGTTTGTATAGGTG
3' ss Score
6.84
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
ACACCCCATCACAGAGGGTACAGTTTATTCTTGGAACCGAGGATGATGACGAGGAACACATTCCTCATGACCTTTTCACAGAACTGGATGAGATTTGTTGGCGTGAAGGTGAGGACGCTGAGTGGCGAGAAACAGCCAG
Seq A exon
GTGGTTGAAGTTTGAAGAAGATGTGGAAGATGGAGGAGAAAGGTGGAGCAAGCCTTATGTGGCTACTCTTTCATTGCACAGCTTGTTTGAATTGAGAAGTTGTATTCTGAATGGAACTGTGTTGCTGGACATGCATGCCAACACTTTAGAAGAAATTGCAG
Seq C2 exon
ATATGGTTCTTGACCAACAAGTGAGCTCAGGTCAGCTGAATGAAGATGTACGCCATAGGGTCCATGAGGCATTGATGAAACAGCATCATCATCAGAATCAGAAAAAACTCACCAACAGGATTCCCATTGTTCGTTCCTTTGCTGATATTGGCAAGAAACAGTCAGAACCAAATTCCATGGACAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290-'28-37,'28-33,29-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=0.005 C2=0.580
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(18.1=85.5)
C2:
PF075658=Band_3_cyto=FE(24.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACCGAGGATGATGACGA
R:
AGCAAAGGAACGAACAATGGGA
Band lengths:
251-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains