DreEX6038700 @ danRer10
Exon Skipping
Gene
ENSDARG00000060303 | slc4a10b
Description
solute carrier family 4, sodium bicarbonate transporter, member 10b [Source:ZFIN;Acc:ZDB-GENE-081105-62]
Coordinates
chr9:51823793-51838880:-
Coord C1 exon
chr9:51838742-51838880
Coord A exon
chr9:51835709-51835869
Coord C2 exon
chr9:51823793-51823981
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTCTGGTGTGTTTTGTGCAGGTG
3' ss Score
9.48
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACACTCCGTCTCAGAGGGTTCAGTTTCTGCTGGGCACTGAGGATGATGATGAAGAGCACATTCCGCATGACCTCTTCACTGAGCTGGATGAGATCTGTCTGCGTGAAGGGGAGGATGCCGAGTGGAGAGAAACCGCCAG
Seq A exon
GTGGCTGAAGTTTGAAGAGGATGTGGAGGATGGAGGCGAGCGCTGGAGTAAACCGTATGTAGCCACTCTCTCTCTGCACAGTCTGTTTGAGCTGCGGAGCTGCATCATCAACGGCACCGTCATGCTGGACATGAGAGCTGGATCACTGGAGGAGATCGCAG
Seq C2 exon
ATATGATACTGGACCAACAGGAAGTGGCTGGTCATCTTGAAGACGATGTCAGGAAGAAGGTGAAGGAGGCTCTTCTAAAGCAGCACCATCATCAGAACCAGAAGAAACTGGCCAATCGGATCCCCATCGTCCGCTCTTTCGCTGACATCGGCAAGAAGCAGTCAGAGTCCAACTGCTTGGACAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060303-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=0.000 C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(18.1=85.5)
C2:
PF075658=Band_3_cyto=FE(24.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCATGACCTCTTCACTGA
R:
GGACTCTGACTGCTTCTTGCC
Band lengths:
248-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]