GgaEX1053551 @ galGal4
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20733113-20752374:-
Coord C1 exon
chr7:20752236-20752374
Coord A exon
chr7:20743288-20743448
Coord C2 exon
chr7:20733113-20733301
Length
161 bp
Sequences
Splice sites
3' ss Seq
AAAATTGGTTGCTTGCACAGGTG
3' ss Score
5.74
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATACTCCATCACAAAGGGTGCAGTTTATTCTTGGAACAGAAGATGATGATGAAGAACACATTCCTCATGATCTCTTTACTGAGCTTGATGAAATTTGTTGGCGTGAAGGAGAGGATGCTGAGTGGAGGGAGACAGCAAG
Seq A exon
GTGGTTGAAGTTTGAAGAAGATGTAGAAGATGGTGGGGAGAGGTGGAGCAAACCATATGTTGCCACACTGTCACTTCATAGCTTGTTTGAGCTGAGAAGCTGTATCCTGAATGGCACAGTTTTGTTGGACATGAGAGCTAACTCCATAGAAGAAATTGCAG
Seq C2 exon
ATATGATTCTGGACCAGCAGGTGGGCTCTGGGCAGCTCAGTGAGGATGTTCGTCATAGAGTACATGAGGCATTACTGAAACAGCATCACCATCAGAACCAGAAGAAACTGAGCAATAGGATCCCGATTGTGAGATCCTTTGCTGATATTGGAAAGAAGCAATCTGAGCCACATTCCATGGATAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-'5-8,'5-5,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=0.000 C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(18.1=85.5)
C2:
PF075658=Band_3_cyto=FE(24.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTTGATGAAATTTGTTGGCG
R:
ATCCATGGAATGTGGCTCAGA
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]