RnoEX6017046 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48156140-48190549:+
Coord C1 exon
chr3:48156140-48156278
Coord A exon
chr3:48178124-48178284
Coord C2 exon
chr3:48190361-48190549
Length
161 bp
Sequences
Splice sites
3' ss Seq
CAAGAATATCTATTTGATAGGTG
3' ss Score
3.11
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATACCCCATCACAGAGGGTGCAGTTTATTCTTGGAACTGAGGACGATGATGAGGAGCACATTCCTCATGACCTTTTCACAGAACTGGATGAAATTTGCTGGCGTGAAGGGGAAGATGCCGAGTGGCGAGAAACAGCCAG
Seq A exon
GTGGTTAAAATTTGAAGAAGATGTGGAAGATGGAGGAGAAAGATGGAGTAAACCCTACGTGGCTACACTTTCGTTGCACAGCTTGTTTGAGTTGAGAAGCTGCATTCTGAACGGAACTGTGCTACTGGACATGCATGCCAACACTTTAGAGGAGATCGCAG
Seq C2 exon
ATATGGTCCTTGACCAGCAGGTCAGCTCAGGCCAGCTGAATGAGGATGTACGCCACAGGGTCCATGAAGCCCTGATGAAGCAGCATCATCACCAGAGTCAGAAAAAGCTCACTAACAGGATTCCTATCGTCCGATCTTTTGCTGATATTGGCAAGAAACAATCAGAGCCAAATTCCATGGATAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-'10-15,'10-14,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=0.056 C2=0.756
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(16.3=85.5)
C2:
PF075658=Band_3_cyto=FE(21.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCACATTCCTCATGACCT
R:
TGGCTCTGATTGTTTCTTGCCA
Band lengths:
258-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]