BtaEX0033583 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005108 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr6:41588316-41607863:+
Coord C1 exon
chr6:41588316-41588455
Coord A exon
chr6:41592636-41592662
Coord C2 exon
chr6:41607770-41607863
Length
27 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTTGTTGCTGCCAGCTG
3' ss Score
8.03
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTGTATTTGTGCTGATGGATTTGAAGGAGAAAATTGTGAAATCAATGTTGATGACTGTGAAGATAATGACTGTGAAAATAACTCTACATGTGTCGATGGAATTAATAACTACACATGCCTTTGCCCACCTGAGTACACAG
Seq A exon
CTGCTAATCTGAATGAGGTGGAAAAAG
Seq C2 exon
GAGAGTTGTGTGAGGAGAAACTGGACTTCTGTGCCCAGGACTTGAACCCCTGCCAGCATGACTCCAAGTGCATCCTGACGCCAAAGGGATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005108_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(32.4=22.9),PF0000822=EGF=PU(90.3=58.3)
A:
PF0000822=EGF=PD(3.3=10.0)
C2:
PF0000822=EGF=PD(6.5=6.2),PF0000822=EGF=PU(63.6=65.6)
Main Inclusion Isoform:
ENSBTAT00000061059fB6551
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACACATGCCTTTGCCCAC
R:
CGTCAGGATGCACTTGGAGTC
Band lengths:
113-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development