GgaEX0021166 @ galGal3
Exon Skipping
Gene
ENSGALG00000014419 | Q90XG3_CHICK
Description
NA
Coordinates
chr4:77728552-77741476:-
Coord C1 exon
chr4:77741337-77741476
Coord A exon
chr4:77737352-77737378
Coord C2 exon
chr4:77728552-77728645
Length
27 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTTGTCACTGCAAGCTG
3' ss Score
4.91
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGCACTTGTGCAGATGGATTTGAAGGAGAAAATTGTGAAATAAATGTTGATGACTGTGAAGACAATGACTGTGAAAATAACTCTACTTGTGTGGATGGAATTAATAATTATACTTGCCTTTGTCCACCTGAATATACAG
Seq A exon
CTGCTAATCTGAATGAAGTGGAAAAAG
Seq C2 exon
GTGAGCTCTGTGAGGAGAAACTAGATTTCTGTGCTCAAAACCTGAACCCTTGCCAGCACGACTCAAAGTGTATCTTGACTCCCAAAGGTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419-'39-54,'39-53,41-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(32.4=22.9),PF0000822=EGF=PU(90.3=58.3)
A:
PF0000822=EGF=PD(3.3=10.0)
C2:
PF0000822=EGF=PD(6.5=6.2),PF0000822=EGF=PU(63.6=65.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCCTTTGTCCACCTGAA
R:
ACCTTTGGGAGTCAAGATACACT
Band lengths:
117-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]