RnoEX0083462 @ rn6
Exon Skipping
Gene
ENSRNOG00000003840 | Slit2
Description
slit guidance ligand 2 [Source:RGD Symbol;Acc:69310]
Coordinates
chr14:66867369-66883741:-
Coord C1 exon
chr14:66883602-66883741
Coord A exon
chr14:66879530-66879556
Coord C2 exon
chr14:66867369-66867462
Length
27 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTTGTCGCTGCCAGCTG
3' ss Score
8.78
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTGTACTTGTGCTGATGGGTTTGAAGGAGAAAGCTGTGACATCAATATTGATGATTGCGAAGATAATGATTGTGAAAATAATTCTACATGCGTTGATGGAATTAACAACTACACGTGTCTTTGCCCACCGGAATACACAG
Seq A exon
CTGCTAATCTGAATGAGGTGGAAAAAG
Seq C2 exon
GCGAACTGTGTGAGGAAAAACTGGACTTCTGTGCACAAGACCTGAATCCCTGCCAGCATGACTCCAAGTGCATCCTGACGCCAAAGGGATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003840-'36-40,'36-39,37-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(32.4=22.9),PF0000822=EGF=PU(90.3=58.3)
A:
PF0000822=EGF=PD(3.3=10.0)
C2:
PF0000822=EGF=PD(6.5=6.2),PF0000822=EGF=PU(63.6=65.6)
Main Inclusion Isoform:
ENSRNOT00000005477fB13836
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACACGTGTCTTTGCCCAC
R:
CGTCAGGATGCACTTGGAGTC
Band lengths:
113-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]