DreEX0073464 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23198073-23198917:+
Coord C1 exon
chr1:23198073-23198212
Coord A exon
chr1:23198410-23198436
Coord C2 exon
chr1:23198824-23198917
Length
27 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTTTTTTCTACCAGCCG
3' ss Score
7.98
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTGTGTGTGTCCAGAAGGATTTGAGGGTGATGAATGTGAGATAAACATTGACGACTGTGAGGATAATGACTGTGAGAATAACTCTACATGCGTGGACGGTATCAACAACTATACCTGTCTCTGCTCACCTGAATACACAG
Seq A exon
CCGCTAATAATAATGAAGTGGAGAAAG
Seq C2 exon
GGGAGCTGTGTGAAGATAAGCTGGATTTTTGTGCTTCAGAGCTTAACCTGTGTCAGCATGACTCCAAATGTATTCTGACTGCTAAAGGCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246_MULTIEX2-17/18=16-18
Average complexity
S
Mappability confidence:
100%=94=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(30.3=20.8),PF0000822=EGF=PU(90.3=58.3)
A:
PF0000822=EGF=PD(3.3=10.0)
C2:
PF0000822=EGF=PD(6.5=6.2),PF0000822=EGF=PU(63.6=65.6)
Main Inclusion Isoform:
ENSDART00000171951fB6131
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCGTGGACGGTATCAACA
R:
TGCTGACACAGGTTAAGCTCTG
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]