MmuEX0043693 @ mm9
Exon Skipping
Gene
ENSMUSG00000031558 | Slit2
Description
slit homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315205]
Coordinates
chr5:48650783-48666914:+
Coord C1 exon
chr5:48650783-48650922
Coord A exon
chr5:48654880-48654906
Coord C2 exon
chr5:48666821-48666914
Length
27 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTTGTCGCTGCCAGCTG
3' ss Score
8.78
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTGCACTTGTGCTGATGGGTTTGAAGGAGAAAACTGTGAAGTCAATATTGATGATTGTGAAGATAATGATTGTGAAAATAATTCTACATGCGTTGATGGAATTAACAACTACACATGTCTTTGCCCACCGGAATACACAG
Seq A exon
CTGCTAATCTGAATGAGGTGGAAAAAG
Seq C2 exon
GTGAACTGTGTGAGGAAAAGCTGGACTTCTGTGCACAAGACTTGAATCCCTGCCAGCATGACTCCAAGTGCATCCTGACTCCAAAGGGATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031558_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(32.4=22.9),PF0000822=EGF=PU(90.3=58.3)
A:
PF0000822=EGF=PD(3.3=10.0)
C2:
PF0000822=EGF=PD(6.5=6.2),PF0000822=EGF=PU(63.6=65.6)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACATGTCTTTGCCCACCG
R:
CCCTTTGGAGTCAGGATGCAC
Band lengths:
119-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: