BtaEX0034181 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014389 | SP4
Description
Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
Coordinates
chr4:30322869-30384810:+
Coord C1 exon
chr4:30322869-30324420
Coord A exon
chr4:30374420-30374648
Coord C2 exon
chr4:30384611-30384810
Length
229 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCCTCTCATTTTTAGGTC
3' ss Score
13.93
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TCAGCAGGTGCAAATTGTAGGCCAGCCTATCTTGCAACAGATCCAGATCCAGCAGCCTCAGCAACAGATAATTCAAGCTATTCCACCCCAGTCTTTTCAGCTCCAGTCAGGGCAGACGATTCAGACCATCCAGCAGCAGCCTTTGCAGAATGTTCAACTTCAAGCAGTAAATCCGACTCAGGTGCTTATCAGGGCTCCAACTTTAACACCTTCAGGGCAAATCACCTGGCAAACTGTACAGGTTCAGAATATTCAGAGTCTTTCAAATTTGCAAGTTCAGAATGCTGGGTTATCCCAGCAATTAACCATCACCCCAGTGTCTTCAAGTGGTGGCACAACCCTTGCTCAGATTGCTCCTGTGGCTGTTGCTGGTGCCCCAATAACTTTGAATACTGCCCAGCTTGCATCAGTGCCTAACCTTCAGACAGTGAGTGTTGCCAACCTGGGTGCTGCGGGCGTTCAAGTGCAAGGAGTTCCAGTTACAATCACCAGTGTGGCAG
Seq A exon
GTCAGCAGCAAGGACAAGATGGAGTGAAAGTCCAACAAGCTACCATAGCTCCTGTAACTGTAGCAGTTGGAGGAATTGCTAATGCAACGATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGGCTTCTGATCAAGAAGTGCAGCCTGGCAAGAGGCTTCGAAGAGTTGCCTGTTCCTGTCCTAATTGTAGGGAAGGAGAAGGAAG
Seq C2 exon
AGGCAGTAATGAACCAGGAAAAAAGAAACAGCATATCTGTCATATTGAAGGATGTGGAAAAGTTTATGGCAAAACCTCTCACCTACGAGCACATCTTCGCTGGCATACTGGAGAAAGACCTTTTATATGCAACTGGATGTTTTGTGGCAAAAGATTCACAAGGAGTGATGAGCTTCAGAGACATAGAAGAACTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014389-'2-6,'2-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.492 A=0.247 C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=41.2),PF134651=zf-H2C2_2=PU(41.7=14.7)
Main Skipping Isoform:
ENSBTAT00000019135fB6672
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTTCAAGTGGTGGCACA
R:
TCTCCAGTATGCCAGCGAAGA
Band lengths:
298-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development