RnoEX0084967 @ rn6
Exon Skipping
Gene
ENSRNOG00000005472 | Sp4
Description
Sp4 transcription factor [Source:RGD Symbol;Acc:3741]
Coordinates
chr6:146145845-146194664:-
Coord C1 exon
chr6:146193107-146194664
Coord A exon
chr6:146152740-146152968
Coord C2 exon
chr6:146145845-146146044
Length
229 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGTCGCTTTTTTAGGTC
3' ss Score
12.97
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TCAGCAAGTACAGATTGTAGGCCAGCCTATCCTGCAGCAAATCCAGATCCAGCAGCCTCAGCAGCAGATTATTCAAGCTATCCCGCCACAGTCATTTCAACTCCAGTCAGGGCAGACAATTCAGACCATCCAGCAGCAGCCTTTGCAGAACGTTCAACTTCAAGCAGTAAACCCGACTCAGGTGCTTATCAGGGCTCCAACTTTAACACCTTCAGGGCAAATCAGCTGGCAAACTGTCCAGGTCCAGAATATTCAGAGTCTTTCAAATTTGCAAGTTCAGAACGCTGGGTTATCCCAGCAGTTAACCATCACCCCAGTGTCTTCAAGCGGTGGCACAACTCTTGCTCAGATTGCTCCTGTGGCTGTTGCTGGTGCCCCAATAACATTGAATACTGCCCAGCTTGCATCAGTGCCTAACCTTCAGACAGTGAGCGTTGCCAACCTGGGTGCTGCGGGTGTTCAAGTTCAGGGAGTTCCAGTAACAATCACTAGTGTTGCAG
Seq A exon
GTCAGCAGCAAGGACAGGATGGAGTGAAAGTCCAGCAAGCTACTATAGCTCCTGTAACGGTGGCAGTTGGAGGGATCGCTAATGCGACAATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGACCTCTGATGCCGAGGTGCAACCTGGCAAGAGGCTTCGAAGAGTTGCCTGCTCGTGTCCTAACTGTAGGGAAGGAGAAGGAAG
Seq C2 exon
GGGCAGCAGTGAACCAGGAAAGAAAAAGCAGCATGTTTGCCACATTGAAGGGTGTGGGAAAGTGTATGGCAAGACTTCTCACCTACGAGCACATCTCCGCTGGCACACTGGAGAACGGCCTTTCATATGCAACTGGATGTTTTGTGGCAAAAGATTCACCAGGAGTGATGAGCTTCAGAGGCACAGAAGGACCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005472_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=0.260 C2=0.309
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=41.2),PF134651=zf-H2C2_2=PU(41.7=14.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAATCAGCTGGCAAACTG
R:
TCTTTCCTGGTTCACTGCTGC
Band lengths:
308-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]