GgaEX6019211 @ galGal3
Exon Skipping
Gene
ENSGALG00000010905 | SP4
Description
NA
Coordinates
chr2:30435768-30455629:+
Coord C1 exon
chr2:30435768-30437325
Coord A exon
chr2:30454981-30455209
Coord C2 exon
chr2:30455430-30455629
Length
229 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCCCTTATTTTACAGGTC
3' ss Score
13.07
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TCAGCAGGTACAGATTGTAGGTCAACCTATTCTACAGCAGATACAGATCCAGCAGCCTCAGCAGCAAATTATACAGGCCATTCCTCCACAGTCATTTCAGCTCCAGTCAGGGCAAACTATACAGACCATTCAGCAGCAGTCTTTGCAGAATGTTCAGCTGCAGGCAGTAAGTCCAACTCAGGTGCTCATCCGGGCTCCAACTTTAACACCATCAGGGCAGATCAGTTGGCAGACTGTACAGGTTCAGAATCTGCAAAGCCTTTCAAATCTTCAAGTTCAGAATGCTGGGTTACCCCAGCAACTCACCATTACCCCTGTGTCTTCAAGTGGTGGCACAACCATTGCCCAGATTGCTCCAGTGGCTGTTGCTGGTACCCCAATCACCCTGAATGCTGCCCAGCTTGCTTCAGTACCTAATCTTCAAACAGTAAGTGTTGCCAACCTGGGTGCTGCAGGTGTTCAAGTTCAAGGAGTTCCAGTTACCATTACCAGTGTTGCAG
Seq A exon
GTCAACAGCAAGGACAGGATGGAGTAAAAGTGCAGCAGGCTACCATAGCTCCTGTTACTGTAGCGGTAGGTGGCATTGCTAATGCAGGAATTGGTGCTGTTAGTCCTGATCAGATAACACAAGTGCAGCTGCAACAAGCTCAACAAGCTTCTGACCAGGAAGTGCAACCTGGCAAGAGAACAAGAAGAGTTGCCTGCTCGTGTCCTAATTGCAGAGAGGGAGAAGGAAG
Seq C2 exon
AAGCAGCAATGAACCAGGAAAAAAGAAGCAACATATCTGCCATATTGAAGGATGTGGTAAAGTTTATGGCAAGACATCTCATCTTCGGGCGCATCTGCGCTGGCATACTGGTGAAAGACCATTTATATGCAACTGGGTTTTTTGTGGCAAGCGATTTACAAGGAGTGATGAGTTGCAAAGACATAGAAGAACCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010905-'3-6,'3-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.273 C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=41.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTTCAAGTGGTGGCACA
R:
TCTTTCACCAGTATGCCAGCG
Band lengths:
302-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]