DreEX0074608 @ danRer10
Exon Skipping
Gene
ENSDARG00000005186 | sp4
Description
sp4 transcription factor [Source:ZFIN;Acc:ZDB-GENE-031202-3]
Coordinates
chr19:2619683-2626876:+
Coord C1 exon
chr19:2619683-2621090
Coord A exon
chr19:2623925-2624117
Coord C2 exon
chr19:2626677-2626876
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTTCTGGATCCTCCCCACAGGTC
3' ss Score
11.66
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
TTTAACCCAATCCAACGGCCTCCAATCCACATCTGAGCAGGCCGGACAAATCCAGCAGTTCCAGATCGTGGGCCACCCGGTGCTCCAGCAGATCCAGATCCAGTCTCCGCAGCAGCAGGTGGTGCAGGGCTCCATACAGATCCAGCCCGGGCAGACTTTACAGCCGGTCCAGCAAAACCTCCAGCTGCAGGCCTTCCAGAACCCGGCGCAGGTGCTGATCCGGACGCCCACGCTCACGCCGTCGGGGCAGATCAGCTGGCAGACGGTGCAGGTGCAGAACGCAGGCATGCCCCAGCAGCTGACGCTCGCCCCGGTGGCGTCCAGCGCAGGCGGTGGGACGTTTGCTCAGATTGCTCCGCTGACGCTCGGAGGCTCACCTATCACGCTCAGCGCCGCGCAGCTGCCCGCGGGCTCAGGGGTGCAGACGGTCAACATTGCCGGTCTGGGGGCGGCTGGAGTGCAGGTGCAGGGCGTCCCGCTCACCATCACCGGTGTACAAG
Seq A exon
GTCAACAGCAGGGTCAGGATGGGGTCAAAGTTCAGTCCGCTCCAGTGACGGTGACCGTTGGGAACATCAGCAACGCTGTGAGTCCTGAGCAGATGGGGCAGGTCCAGAGCCCGTCCGATCAGGAGGGTCAACCCAGCAAGAGGCTGCGCAGGGTGGCCTGTTCCTGCCCCAACTGCAGAGATGGAGAGGGCAG
Seq C2 exon
AAACAACAGCGACCCGTCAAAGAAGAAGCAGCATGTGTGTCATATGGAGGGTTGTGGGAAGGTTTATGGGAAAACGTCTCACCTGAGGGCTCACCTGCGCTGGCACACAGGAGAACGACCATTCGTCTGTAACTGGATCTTCTGTGGGAAACGCTTCACGCGGAGCGACGAGCTGCAGCGGCACCGCAGAACACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005186-'6-4,'6-2,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=0.669 C2=0.338
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=41.2),PF134651=zf-H2C2_2=PU(41.7=14.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGTTTGCTCAGATTGCT
R:
GCCCTCAGGTGAGACGTTTTC
Band lengths:
256-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]