BtaEX0034786 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002658 | STAM
Description
Bos taurus signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 (STAM), mRNA. [Source:RefSeq mRNA;Acc:NM_001076842]
Coordinates
chr13:32427042-32445156:+
Coord C1 exon
chr13:32427042-32427132
Coord A exon
chr13:32428949-32429141
Coord C2 exon
chr13:32444523-32445156
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTAAACTCATTATTTTCCAGCCA
3' ss Score
7.03
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GCTGCAGAACAAGCGAAAGCAAGCCCAGCTCTGGTAGCCAAGGATCCTGGTACTGCGGCTAACAAAAAAGAAGAGGAAGATTTAGCGAAAG
Seq A exon
CCATTGAGTTGTCCCTGAAGGAACAAAGGCAGCAGTCAACCACCCTTTCCACTTTGTATCCAAGCACATCCAACCTCTTAACTAACCATCAACATGAAGGCCGGAAAGTTCGTGCTATATACGACTTTGAAGCTGCTGAAGATAATGAACTGACTTTTAAAGCTGGAGAAATTATTACAGTTCTTGATGACAG
Seq C2 exon
CACAATGGTCAGCTCCGTCCCGGGAAGTACGTATCCCAGCCAGGCTTCAGTGTACAGTCCTCCCCCTGCTGCCACAGCTGCTCCCGACGTCACCATCTACCAGAACACAGGGACCAGCCTGTCCCAGGTGCCGAACTATACATTACCGTCCACACTGCCCCAGCCTGGGGGCAGCCAGCAGCCACCTCAGCCGCAGCAGCCGTACTCCCAGAAGGCTCTGCTATAGGACTGGAGTCCCCTTTGTGGCAAATACCCGCCGATCGCCAATGGCAATGTTACGAGATTCTTTAATATCTTAAGATTGGTTTACCCTCAGCTTATAGGAATCGTATCTTGGTCAACACGTTCCAATGTTCAAGAAGGGAGATCCCTCTTCAATTTGCACTGACTTTTTAGAGAGTCTCCCCTCCCCTCCCCTGTGAGGAATGAAACTACTTACAACATATAATTCCTTTCATAATATGAAAGGGTCAATGCAAGATTATCTGTCTCGTAAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002658_MULTIEX1-7/13=6-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=0.431 C2=0.947
Domain overlap (PFAM):
C1:
PF0280915=UIM=PU(50.0=29.0)
A:
PF0280915=UIM=PD(44.4=12.3),PF0001823=SH3_1=PU(58.7=41.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTACTGCGGCTAACAAA
R:
TCTGGGAGTACGGCTGCTG
Band lengths:
258-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development