DreEX6027580 @ danRer10
Exon Skipping
Gene
ENSDARG00000002127 | stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:ZFIN;Acc:ZDB-GENE-031118-123]
Coordinates
chr2:31462209-31464817:+
Coord C1 exon
chr2:31462209-31462299
Coord A exon
chr2:31462388-31462586
Coord C2 exon
chr2:31464723-31464817
Length
199 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTCTCTCTTTCTCAGCTA
3' ss Score
10.39
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCAGCAGAGCAAGCTAAAGCCAGTCCCGCATTGGTAGCTAAAGATCCTGCAACATCAACAAACAAGAAGGAAGAAGAAGACCTTGCTAAAG
Seq A exon
CTATTGAACTGTCTCTGAAGGACCAGCGGCATCAGCAGCCTCAGGTGTCTCTGTCTGGCCTCTACCCGAGCACCAGCAGCCTCCTGACCTCCCACAAGACAGACGGCAGAAAGGTCAGGGCTATCTATGACTTTGAAGCAGCCGAAGACAACGAGCTCACTTTTAAATCAGGCGAGATCATCACTATCCTGGATGACAG
Seq C2 exon
TGACCCTAACTGGTGGAAAGGTGAGACATATCAGGGTGTTGGGCTTTTTCCGTCAAACTTTGTGACAGCGGACCTGACAGCAGAGCCTGAGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002127-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.194 C2=0.303
Domain overlap (PFAM):
C1:
PF0280915=UIM=PU(50.0=29.0)
A:
PF0280915=UIM=PD(44.4=11.9),PF0001823=SH3_1=PU(58.7=40.3)
C2:
PF0001823=SH3_1=PD(39.1=54.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGAGCAAGCTAAAGCC
R:
TCATCTCAGGCTCTGCTGTCA
Band lengths:
186-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]