RnoEX0086630 @ rn6
Exon Skipping
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81238278-81240997:+
Coord C1 exon
chr17:81238278-81238368
Coord A exon
chr17:81238716-81238908
Coord C2 exon
chr17:81240903-81240997
Length
193 bp
Sequences
Splice sites
3' ss Seq
TAACCTCTCACGGTTTGCAGCTA
3' ss Score
6.84
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTGCAGAACAAGCGAAAGCAAGCCCGGCTCTGGTAGCCAAGGACCCTGGCACTGTGGCTACCAAAAAGGAAGAAGAAGATTTAGCCAAAG
Seq A exon
CTATTGAGTTGTCGCTCAAGGAGCAAAGGCAGCAGGCAGCCCCCCTCTCCACGTTGTACCCAAGCACATCCAGTCTCCTCACTAACCACCAACATGAAGGCAGGAAAGTCCGCGCTGTGTATGACTTTGAGGCTGCAGAGGACAATGAGCTCACCTTTAAAGCTGGAGAGGTCATCACAGTGCTTGACGACAG
Seq C2 exon
TGATCCCAACTGGTGGAAAGGTGAAACACATCAAGGCATGGGGCTTTTTCCTTCTAATTTTGTAACTGCAGATCTTACTGCTGAACCGGAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.400 C2=0.667
Domain overlap (PFAM):
C1:
PF0280915=UIM=PU(50.0=29.0)
A:
PF0280915=UIM=PD(44.4=12.3),PF0001823=SH3_1=PU(58.7=41.5)
C2:
PF0001823=SH3_1=PD(39.1=54.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGAACAAGCGAAAG
R:
TCATTTCCGGTTCAGCAGTAAGA
Band lengths:
186-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]